(1)After the surprising Algiers Agreement between Iran and Iraq is reached, the United States stops its support for the Kurdish rebels, which causes the fragmentation of the opposition and an increased vulnerability to Hussein's renewed attacks.
(2)That the United States stops its support for the Kurdish rebels causes the fragmentation of the opposition and an increased vulnerability to Hussein's renewed attacks.
(3)It causes the fragmentation of the opposition and an increased vulnerability to Hussein's renewed attacks that the United States stops its support for the Kurdish rebels
Why are both (2) and (3) unnatural, while (1) is natural?
In PEU Swan writes which can refer not only to a noun, but also to the whole of a previous clause, in this case, the United States stops its support for the Kurdish rebels.
He also writes, in another place, a that-clause can be the subject.
So, there should be no problem with (2) or (3).