It is interesting to see the usage in the NYT. I see instances where a comma is used. I see just as many where it isn't. With one exception in twenty, every article printed prior to 1950 appears to use "because, although." Removing the comma appears tocould be a (relatively) new convention.
If students are confused, it should always be possible to restructure the sentence to separate the two words.
"Although the narrator does say she hates lemons, choice A is incorrect because this is not the main idea of the passage."