I tend to use dependent clauses frequently in scientific writing. This is especially true when discussing a problem-solving process where the result from one step leads into the next. Here's a made-up example, with the dependent clauses in bold.
To overcome the issue of noise, we performed a Fast Fourier transform on the resultant time series. Although the output represented only half of the observations, we temporally interpolated the remaining observations based on historical trends archived previously. Moreover, the use of temporal interpolation allows us to fill data gaps when the detector failed to make observations.
When I try to integrate the dependent clause into the independent clause, the paragraph loses the logical flow of problem-then-solution sentence construction and the sentences feels disjointed:
We performed a Fast Fourier transform on the resultant time series to overcome the issue of noise. We temporally interpolated the remaining observations based on historical trends archived previously because the output represented only half of the observations. The use of temporal interpolation also allows us to fill data gaps when the detector failed to make observations.
While I do prefer the first version, is it stylistically and technically undesirable to use dependent clauses in successive sentences? Or am I just being paranoid?